I usually point naturally with guns that I have shot, such that the front sight lines up with the rear. However, with some, such as the glock, the front sight may point high or low, usually depending on the heel or tail ergonomics and frontstrap/backstrap design of the pistol. With glocks, I do the opposite that you do. I naturally point very high with glocks. I just make myself learn to the gun; shooter > gear. However, I agree that it's much better to shoot a gun you shoot naturally with. That's why I do have a primary platform I use.
Huh? did I ask a question? That being said, I agree with what you are, uh agreeing to.